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in press
2022
- Adu, B.G., Argete, A.Y., Nagano, A., Egawa, J, Shimizu A., Yoshihiro Ohmori, Y., Toru Fujiwara, T. (2022)
gAn Oryza rufipogon x Koshihikari Introgression Line with a High Capacity to Take Up Nitrogen to Maintain Growth and Panicle Development Under Low Nitrogen Conditionsh
Plant & Cell Physiology63:1215-1229. DOI:10.1093/pcp/pcac097
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- Kokaji H., Shimizu A. (2022)
gAn Indica Rice Cultivar eHabatakif Segment on Chromosome 6 Improves Low-Phosphorus Toleranceh
Journal of Crop Research 67:1-6.
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2019
2015
- Kosugi A., Tamaru J., Gotou K., Furihata H.Y., Shimizu A., Kawabe A., Harada,E. (2015)
gMetal accumulation by Arabidopsis halleri subsp. gemmifera at a limestone mining siteh
Australian Journal of Botany 63:134-149. DOI:10.1071/BT14242
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2014
- Iehisa J.C.M., Shimizu A., Sato K., Nishijima R., Sakaguchi K., Matsuda R., Nasuda S., Takumi S. (2014)
gGenome-wide marker development for the wheat D genome based on single nucleotide polymorphisms identified from transcripts in the wild wheat progenitor Aegilops tauschiih
Theoretical and Applied Genetics 127:261-271. DOI:10.1007/s00122-013-2215-5
L[[h:RM, RNAseq
2012
- Iehisa J.C.M., Shimizu A.(equal contribution), Sato K., Nasuda S., Takumi S. (2012)
gDiscovery of high-confidence SNPs from large-scale de novo analysis of leaf transcripts of Aegilops tauschii, a wild wheat progenitorh
DNA Research 19:487-497. DOI:10.1093/dnares/dss028
L[[h:RM, RNAseq, ’γV[PX, de novo assemble
- Takayanagi S., Takagi Y. Shimizu A., Hasegawa H.
gThe shoot is important for high-affinity nitrate uptake in Egeria densa, a submerged vascular planth
J Plant Research 125(5):669-678. DOI:10.1007/s10265-012-0480-z
2011
- Ochiai K., Shimizu A., Okumoto Y., Fujiwara T., Matoh T. (2011)
gSuppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice (Oryza sativa L.)h
Plant Physiology 156(3):1457-1463. DOI:10.1104/pp.110.171470
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- Hamada K., Hongo K., Suwabe K., Shimizu A., Nagayama T., Abe R., Kikuchi S., Yamamoto N., Fujii T., Yokoyama K., Tsuchida H., Sano K., Mochizuki T., Oki N., Horiuchi Y., Fujita M., Watanabe M., Matsuoka M., Kurata N., Yano K. (2011)
gOryzaExpress: An Integrated Database of Gene Expression Networks and Omics Annotations in Riceh
Plant Cell Physiology 52(2): 220-229. DOI: 10.1093/pcp/pcq195
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2010
2009
- Shimizu A., Kawasaki S. (2009)
gRapid construction of a high-density rice linkage map by High Efficiency Genome Scanning (HEGS) system.h
Rice Science 16(4):247-251. DOI: 10.1016/S1672-6308(08)60087-6
L[[h: HEGS (High Efficiency Genome Scanning) \¦Qmμ@
- Shimizu A. (2009)
gQTL analysis of genetic tolerance to iron-toxicity in rice (Oryza sativa L.) by quantification of bronzing score.h
Journal of New Seeds 10(3):171-179. DOI: 10.1080/15228860903064989
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- Minami M., Suzuki K, Shimizu A., Hongo T., Samamoto T., Ohyama N, Kitaura H., Kusaka A., Iwama K., Irie T. (2009)
gChanges in the gene expression of the white rot fungus Phanerochaete chrysosporium by the addition of atropineh
Bioscience, Biotechnology, and Biochemistry 73(8):1722-1731. DOI: 10.1271/bbb.80870
L[[h: "In silico SAGE"πS
2008
- Shimizu A., Kato K., Komatsu A., Motomura K., Ikehashi H. (2008)
gGenetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.) : fine QTL mapping and multivariate analysis of related traitsg
Theoretical and Applied Genetics 117: 987-996. DOI: 10.1007/s00122-008-0838-8
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- Ochiai K., Uemura S., Shimizu A., Okumoto Y., Matoh T. (2008)
gBoron toxicity in rice (Oryza sativa L.). I. Quantitative Trait Locus (QTL) analysis of tolerance to boron toxicity.h
Theoretical and Applied Genetics 117: 125-133. DOI: 10.1007/s00122-008-0758-7
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- Shimizu A., Kato K., Komatsu A., Ikehashi H. (2008)
"Genome and transcriptome analyses for acid tolerance in rice : phosphorous deficiency and low pH stress."
In: Proceedings of the Final International Meeting for 21th Century Center for Excellence (COE) Program, gDevelopment of New Bioremediation Systems of Acid Sulfate Soil for Agriculture and Forestryh.
S. Sasaki (eds), SHOUKADOH Book Sellers, Kyoto, 25-28. ISBN 978-4-87974-608-5
L[[h: ClAαpHXgXΟ«ARA}CNAC
2006
- Yano K., Imai K., Shimizu A.(equal contribution), Hanashita T. (2006)
gA new method for gene discovery in large-scale microarray datah
Nucleic Acids Research 34:1532-1539. DOI: 10.1093/nar/gkl058
L[[h: }CNACA½³f[^πΝAΞͺΝ
2005
- Shimizu A., Guerta C.Q., Gregorio G.B., Kawasaki S., Ikehashi H. (2005)
gQTLs for nutritional contents of rice seedlings (Oryza sativa L.) in solution cultures and its implication to tolerance to iron-toxicity.h
Plant and Soil 275: 57-66. DOI: 10.1007/s11104-004-4683-5
L[[h: ClASίθQARAJERAQTLπΝ
- Shimizu A., Guerta C.Q., Gregorio G.B., Ikehashi H. (2005)
gImproved mass screening of tolerance to iron toxicity in rice by lowering temperature of culture solutionh
Journal of Plant Nutrition 28: 1481-1493. DOI: 10.1080/01904160500201352
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- Sugita T., Kinoshita T., Kawano T., Yuji K., Yamaguchi K., Nagata R., Shimizu A., Chen L., Kawasaki S., Todoroki A. (2005)
gRapid construction of a linkage map using high-efficiency genome scanning/AFLP and RAPD, based on an intraspecific, doubled-haploid population of Capsicum annuumh
Breeding Science 55: 287-295. DOI: 10.1270/jsbbs.55.287
L[[h: HEGS (High Efficiency Genome Scanning) \¦Qmμ@
2004
2003
- Hori K., Kobayashi T., Shimizu A., Sato K., Takeda K., Kawasaki S. (2003)
gEfficient construction of high-density linkage map and its application to QTL analysis in barleyh
Theoretical and Applied Genetics 107: 806-813. DOI: 10.1007/s00122-003-1342-9
L[[h: HEGS (High Efficiency Genome Scanning) \¦Qmμ@
- Kawasaki S., Murakami Y., Imaizumi-Anraku H., Shimizu A., Mikami I. (2003)
gConstruction of High-Density Map, Genome Library, and Saturation Mapping of Nodulation Genes.h
In: Biotechnology in Agriculture and Forestry, Vol52: 183-202.¨
L[[h: HEGS (High Efficiency Genome Scanning) \¦Qmμ@
1996
- Shimizu A., Wan J., Ikehashi H. (1996)
gGenetic markers for tolerance to iron toxicity in rice.h
Rice Genetics Newsletter 13: 132-134.¨
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